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122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking episode artwork

Mar 9, 2024 17 min

122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking

from Micro binfie podcast Hosted by Microbial Bioinformatics

We discuss GAMBIT, software for accurately classifying bacteria and eukaryotes using a targeted k-mer based approach. GAMBIT software: https://github.com/gambit-suite/gambit GAMBIT suite: https://github.com/gambit-suite GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification. https://doi.org/10.1371/journal.pone.0277575 TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2023.1198213/full

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122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking

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