22 Assembly after party

When you get an assembly the fun doesnt stop there. You then have to fix it up and see how good it is. In this episode we discuss scaffolding, gapfilling, polishing, assembly metrics, quality control, genome structure, and visualisation tools. Tools and papers mentioned: https://github.com/quadram-institute-bioscience/socru https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004446