400: Complete chromosome 21 centromere sequencing and Down syndrome

Mastrorosa F et al., The American Journal of Human Genetics - Long-read assemblies and epigenetic mapping of chromosome 21 centromeres in families with trisomy 21 reveal centromere size diversity, two cases of extreme maternal centromere size asymmetry, and no global enrichment of small centromeres in affected individuals. Key terms: trisomy 21, centromere, alpha-satellite, long-read sequencing, meiotic nondisjunction. Study Highlights:Using PacBio HiFi and ultra-long ONT reads with hybrid assembly and DiMeLo-seq, the authors fully resolved chr21 centromeres in eight T21 individuals and several parents and compared them to 287 population haplotypes. Small centromeres were not overall enriched in T21 cases, contradicting earlier reports, but two families showed extreme (>10-fold) maternal centromere size asymmetry. CDRs and CENP-A/CENP-C signals were present across haplotypes and methylation profiles were largely conserved between generations and sample types. Phylogenetic analysis indicates recent rapid evolution of chr21 centromere haplotypes that may facilitate such asymmetry. Conclusion:Centromere size alone does not explain trisomy 21 risk at the population level, but extreme maternal centromere size asymmetry appears in a minority of families and may contribute to nondisjunction in those cases. Music:Enjoy the music based on this article at the end of the episode. Article title:Complete chromosome 21 centromere sequencing of families with Down syndrome First author:Mastrorosa F Journal:The American Journal of Human Genetics DOI:10.1016/j.ajhg.2026.05.010 Reference:Mastrorosa F.K., Daponte A., de Gennaro L., et al. Complete chromosome 21 centromere sequencing of families with Down syndrome. The American Journal of Human Genetics. 113, 1–18 (2026). https://doi.org/10.1016/j.ajhg.2026.05.010 License:This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) – https://creativecommons.org/licenses/by/4.0/ Support:Base by Base – Stripe donations: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00 Official website https://basebybase.com On PaperCast Base by Base you'll discover the latest in genomics, functional genomics, structural genomics, and proteomics. Episode link: https://basebybase.com/episodes/chr21-centromere-sequencing-down-syndrome QC:This episode was checked against the original article PDF and publication metadata for the episode release published on 2026-06-23. QC Scope:- article metadata and core scientific claims from the narration- excludes analogies, intro/outro, and music- transcript coverage: Audited transcript sections covering centromere structure, long-read sequencing workflow, extreme centromere size asymmetry findings, CpG/epigenetic mapping (CDRs, CENP-A/CENP-C), and population/evolutionary context.- transcript topics: Centromere structure and alpha-satellite HOR arrays; Maternal nondisjunction and Down syndrome etiology; Long-read sequencing technologies and hybrid phasing; Epigenetic centromere mapping (CDRs, CENP-A/CENP-C, CpG methylation); Centromere size asymmetry in Down syndrome families; Population diversity of chr21 centromeres (African ancestry four-mer HOR) QC Summary:- factual score: 10/10- metadata score: 10/10- supported core claims: 7- claims flagged for review: 0- metadata checks passed: 4- metadata issues found: 0 Metadata Audited:- article_doi- article_title- article_journal- license Factual Items Audited:- Small chr21 centromeres are not enriched in Down syndrome cases compared with controls (p = 0.72).- Extreme centromere size asymmetry (>10-fold) observed in two Down syndrome families (e.g., 10.7-fold... Chapters (00:00:20) - Down Syndrome: The mystery of the cell division(00:04:45) - Down Syndrome: The repetitive DNA handles(00:09:49) - Down Syndrome: The tug of war(00:14:16) - The genetics of trisomy 21(00:15:58) - Down Syndrome: The mystery of the genetic cause(00:20:13) - A Single Link in the Code