43: Population heterogeneity, insulin sensitivity, proteome & signaling mapping

Kjærgaard J et al., Cell - This episode reviews a study that links in vivo insulin sensitivity phenotyping with proteome and signaling-pathway mapping to define molecular-phenotype associations across heterogeneous populations. The paper emphasizes population heterogeneity and maps proteomic signatures to functional signaling pathways associated with insulin sensitivity. Key terms: population heterogeneity, insulin sensitivity, proteome mapping, signaling pathways, molecular-phenotype association. Study Highlights:The study performs in vivo insulin sensitivity phenotyping alongside proteome mapping and signaling pathway mapping to characterize molecular-phenotype associations. It highlights population heterogeneity as a central feature influencing phenotype–molecular links. The authors present maps connecting proteomic signatures and signaling pathways to variation in insulin sensitivity across cohorts. Conclusion:Proteome and signaling-pathway mapping integrated with in vivo insulin sensitivity phenotyping reveals molecular-phenotype associations and underscores population heterogeneity. Music:Enjoy the music based on this article at the end of the episode. Article title:Personalized molecular signatures of insulin resistance and type 2 diabetes First author:Kjærgaard J Journal:Cell DOI:10.1016/j.cell.2025.05.005 Reference:Kjærgaard J., Stocks B., Henderson J., Freemantle J.B., Rizo-Roca D., Puglia M., et al.. Personalized molecular signatures of insulin resistance and type 2 diabetes. Cell, 188, 4106-4122.e16. (2025). https://doi.org/10.1016/j.cell.2025.05.005 License:This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) – https://creativecommons.org/licenses/by/4.0/ Support:Base by Base – Stripe donations: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00 Official website https://basebybase.com On PaperCast Base by Base you'll discover the latest in genomics, functional genomics, structural genomics, and proteomics. Episode link: https://basebybase.com/episodes/population-heterogeneity-insulin-proteome-signaling-mapping QC:This episode was checked against the original article PDF and publication metadata for the episode release published on 2025-06-11. QC Scope:- article metadata and core scientific claims from the narration- excludes analogies, intro/outro, and music- transcript coverage: Substantive audit of the transcript's core scientific narrative: insulin resistance in skeletal muscle, clamp methodology, proteomics/phosphoproteomics mapping, continuous molecular signatures vs binary labels, baseline proteome predictive power, LDHA/LDHB dynamics, S65 AMPK gamma3 phosphorylation, JNK-P38 stress signa- transcript topics: Skeletal muscle insulin resistance paradox and continuous phenotype spectrum; Hyperinsulinemic-euglycemic clamp methodology and M value; DIA-based proteomics and phosphorylation mapping (proteome >3000 proteins; ~29000 phosphosites); Baseline (fasting) proteome as predictor of insulin sensitivity; LDHA/LDHB glycolytic vs oxidative enzyme balance; S65 phosphorylation on AMPK gamma 3 as a predictor and human-specific site; pig mutation context QC Summary:- factual score: 10/10- metadata score: 10/10- supported core claims: 6- claims flagged for review: 0- metadata checks passed: 4- metadata issues found: 0 Metadata Audited:- article_doi- article_title- article_journal- license Factual Items Audited:- Discovery and validation cohorts: 77 and 46 participants respectively- Hyperinsulinemic-euglycemic clamp used to measure insulin resistance; M value derived- Continuous molecular spectrum that correlates with M value, not...