47 SARS-CoV-2 Rapid roundup and questions answered

What this episode covers

We present a rapid round up of SARS-CoV-2 questions and issues, hopefully with some answers, so that you can stay on top of the latest in SARS-CoV-2 genomics. Recorded 5 February 2021. Topics covered: Why missing 1 SNP can cause lineage assignment to break and how it works? How do we describe lineages with a chain of mutation events? Are we seeing convergent evolution? Co-infections of different lineages discovered? For nanopore basecalling do use HAC & should you get a GPU? Basic logistics difficult for sequencing in many parts of world. Can I look at recombination with ARTIC on Illumina? How do you annotate a SARS-CoV-2 sequence? http://cov-glue.cvr.gla.ac.uk/#/home FASTA > nextclade VCF > snpeff https://github.com/cov-ert/type_variants Spotting community spread from NextStrain? Scientists call for fully open sharing of coronavirus genome data: https://www.nature.com/articles/d41586-021-00305-7

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How long is this episode of Micro binfie podcast?

This episode is 32 minutes long.

When was this Micro binfie podcast episode published?

This episode was published on February 8, 2021.

What is this episode about?

We present a rapid round up of SARS-CoV-2 questions and issues, hopefully with some answers, so that you can stay on top of the latest in SARS-CoV-2 genomics. Recorded 5 February 2021. Topics covered: Why missing 1 SNP can cause lineage assignment...

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