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Episode 32: Interview with Josh Chorlton episode artwork

EPISODE · Mar 5, 2024 · 1H 5M

Episode 32: Interview with Josh Chorlton

from nf-cast - the bioinformatics podcast · host Seqera

In this episode of Channels, we talk to Josh Chorlton - CTO & cofounder of BugSeq Bioinformatics Inc. We talk about how BugSeq got into using Nextflow and MultiQC and the tips and tricks that they've employed to push scale and performace of their tools to the limit. We cover topics like testing and CI/CD, passing around structured data objects between Groovy and Python using Protobufs, building Docker images at scale and the ins and outs of using MultiQC for custom clinical data reports.

What this episode covers

In this episode of Channels, we talk to Josh Chorlton - CTO & cofounder of BugSeq Bioinformatics Inc. We talk about how BugSeq got into using Nextflow and MultiQC and the tips and tricks that they've employed to push scale and performace of their tools to the limit. We cover topics like testing and CI/CD, passing around structured data objects between Groovy and Python using Protobufs, building Docker images at scale and the ins and outs of using MultiQC for custom clinical data reports.

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Episode 32: Interview with Josh Chorlton

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Frequently Asked Questions

How long is this episode of nf-cast - the bioinformatics podcast?

This episode is 1 hour and 5 minutes long.

When was this nf-cast - the bioinformatics podcast episode published?

This episode was published on March 5, 2024.

What is this episode about?

In this episode of Channels, we talk to Josh Chorlton - CTO & cofounder of BugSeq Bioinformatics Inc. We talk about how BugSeq got into using Nextflow and MultiQC and the tips and tricks that they've employed to push scale and performace of their...

Can I download this nf-cast - the bioinformatics podcast episode?

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