She Cries Rape

Joseph was sold into slavery by his brothers. He must have felt so betrayed and afraid. But he was bought by an important man and God gave him favor towards Joseph. He was soon put in charge of his master's entire household. But his wife also had favor towards Joseph and since Joseph continued to turn her down, she decided to get rid of him. She made up false rape accusations and Joseph was thrown into prison. But God was with him and he was favored by the prison keeper too and made the second in charge there also. So God was with him, but still allowed him to suffer when he had done no wrong? Why? How do we react in times of suffering? Do we trust Him? Do we question Him?