All episodes
156 - Ancient problems require ancient solutions - part 2
155 - Ancient problems require ancient solutions - part 1
154 - Boston women in bioinformatics
153 - Seebot
152 - Deacon part 2
151 - Deacon part 1
150 - Genomicx
149 - Bridging AI & Biosciences
148 - NextFlow debate 3
147 - NextFlow debate 2
146 - NextFlow debate 1
145 - micro binfie Pathoplexus part 2
144 - micro binfie Pathoplexus part 1
143 - where we catch up on our professional lives
142 - Microbinfie - genomeqc
140 Exploring Clinical Metagenomics
139 Lassa virus genomics
138 Decoding Tetracycline Resistance in MRSA
137 Contagion part 2
135 Assembling ATCC bacterial strains
141 hackathon panel
136 Contagion part 1
134 Diving into MRSA, Genomics, and Public Health
133 The Role of Bioinformatics in Public Health and Disease Outbreaks
132 Unlocking the Secrets of Antimicrobial Resistance in Metagenomes
131 Bioinformatics Evolution: Torsten Seemann on Snippy, Open-Source Support, and Global Genomics
130 Exploring Genomic Innovation and Machine Learning in Public Health
129 Genomics on the Frontier: Bactopia, Bioinformatics, and Pathogen Surveillance with Robert Petit
128 Haiti cholera outbreak with Christine Lee and Cynney Walters
127 Minimum spanning trees
126 Tree viz
125 Kostas Konstantinidis returns to talk to us about ANI and metagenomics
124 Kostas Konstantinidis talks to us about ANI and metagenomics
123 The Revolution of Hash Databases in cgMLST
122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking
121 K-mers, Sourmash, and Open Source Software - More Conversations with Titus Brown
120 Scaling Metagenomic Search with Sourmash - Conversations with Titus Brown
119 The Challenges of Microbial Taxonomy - Conversations with Titus Brown
118 Real bioinformaticians react to Jurassic Park
117 From Math to Metagenomics - Titus Brown on Career Journeys and Software Solutions
116 AI Authorship and Ethics in Academic Publishing for Genomics
115 Write-the: speeding up software development for bioinformatics
114 Write-the: Automating Code Documentation ChatGPT
113 Global Microbial Identifier conference with Ruth Timme
112 Global Microbial Identifier conference with Will Hsiao
111 Global Microbial Identifier with Finlay Maguire and Emma Griffiths
110 ChatGPT: The Bioinformatics Calculator
109 AI Unleashed: Navigating the Opportunities and Challenges of AI in Microbial Bioinformatics
Encore: What language should I learn?
108 SeqCode: a nomenclatural code for prokaryotes described from sequence data
107 Systematics and naming of prokaryotes in the era of sequencing
106 Why on earth would you do a PostDoc?
105 Mobile genetic elements panel discussion
104 The Kraken software suite
103 Release the Kraken
102 Early days of MLST
101 One Health with Natacha Couto and Ed Feil
100 The 100th episode
99 Stories from the frontlines of bioinformatics
98 Nomadic bioinformatics with Frank
97 Advances in sequencing technologies
96 IMMEM XIII and ASM NGS conference roundup
95 Lost in Translation with Torsten Seemann
94 The great scientific Mastodon migration
93 Roary Troubleshooting And Issues
92 Avoid dependency hell and get up and running fast
91 What language should I learn?
90 Public health bioinformatics on the cloud with WDL + Terra.bio
89 What do we do with WDL?
88 Sepia directors cut
87 Nextstrain, SARSCOV2 and dealing with a data deluge
86 What's next for nextstrain?
85 Breaking the dogma with bioinformatics
84 Bioinformatics in the noughties with Mark Pallen
83 A short journey into mobile genetic elements
82 Bioinformatics moments before the millennium
81 The people behind the benchmark datasets for SARS-CoV-2
80 Benchmark datasets for SARS-CoV-2
79 StaPH-B: Stable containers for public health bioinformatics
78 StaPH-B: state public health bioinformatics
77 Genomics for a new era
76 What are the major challenges for getting AMR genomics into the clinic?
74 SEPIA With Henk - Soup Or Salad Yes!
73 Bactopia and using workflow managers in bioinformatics part 2
72 Bactopia and using workflow managers in bioinformatics part 1
71 Bacterial taxonomy: Into the unknown, SeqCode, naming uncultured multitudes and renaming of phyla
70 Bacterial Taxonomy: the grand vista is ahead of us
69 Background to bacterial taxonomy
68 Bacterial Taxonomy: what is a species, what is a strain? part 2
67 Bacterial Taxonomy: what is a species, what is a strain?
66 Scholarly Communications for Bioinformaticians
75 How to review a bioinformatics paper in 10 days or less
65 Genomics of Mycobacterium tuberculosis
64 Mycobacterium tuberculosis: the forgotten pandemic
63 A dive into Campylobacter genomics
62 Campylobacter: the fussy little pathogen
61 Non FUNGIble tokens: you too can own BRCA1
Encore: 06 - What software not to write
60 Whats in a name: Salmonella and E. Coli
59 - Microbe Moment Micro Binfie